First of all thank you for all your answers!
I don't know how to recreate such file. It was created with the current official 0.16 release:
In my case I will resolve it unzipping the archive and manual editing the faulty dependency. I reported here just to let the developer know about this issue (I think it can be resolved with a proper try catch section).
PS. I forgot to report which version is showing the issue (but also the last version from git has the same problem)
OS: Debian GNU/Linux 8.4 (jessie)
Word size of OS: 64-bit
Word size of FreeCAD: 64-bit
Version: 0.16.6703 (Git)
Build type: Unknown
Python version: 2.7.9
Qt version: 4.8.6
Coin version: 4.0.0a
OCC version: 6.8.0.oce-0.17